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greasemonkeyDr Shock asked for this.  I use five Greasemonkey scripts.

*) Pubmed redirect. First of all I redirect all pubmed pages (ncbi.nlm.nih.gov) to the pubmed page (ncbi.nlm.nih.gov.proxy.library.uu.nl) of my university
*) Automatically open UBU link. If the pubmed page consists of a direct (UBU) link this script automatically opens the link to the pages of for instance a journal.
*) Resize window. For some reason I do not know a library page opens in a small windows. This scripts makes sure that the window resizes to the full screen.
*) Automatically open PDF.  If the pubmed page consists of links to pdf’s then this script automatically opens the pdf.
*) Redirect Springerlink. This is a redirect script for Springer pages.

You can find the scripts below. Any questions? Let me know.

—– Pubmed redirect ———————————————

// ==UserScript==
// @name           Redirect Pubmed
// @namespace      Redirect Pubmed
// @description    Redirect Pubmed
// @include        http://*ncbi.nlm.nih.gov*/*
// ==/UserScript==

//alert(document.location.href);
var str =  document.location.href; // get the hyperlink of the current page and store it in the variable str
var matchpos = str.search(/proxy.library.uu.nl/); // see if proxy.library.uu.nl occurs in the variable str 
var rep =   “ncbi.nlm.nih.gov.proxy.library.uu.nl”;  // store new hyperlink in variable rep
if (matchpos ==-1){ // if str does not contain proxy.library.uu.nl then substitute links
str = str.replace(/ncbi.nlm.nih.gov/g, rep); // substitute ncbi.nlm.nih.gov with variable rep
document.location.href= str;
}

———————————————————————–

—– Automatically open UBU Link —————————-
// ==UserScript==
// @name           Automatically open UBU Link
// @namespace      NLM.NIH.GOV.PROXY.LIBRARY.UU.NL
// @include        http://*ncbi.nlm.nih.gov.proxy.library.uu.nl*
// ==/UserScript==

// an UBU link is characterized by one of the following links: sfx.library.uu.nl, pubmedcentral.nih.gov/articlerender or ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId

 

var links = document.getElementsByTagName(’a'); // get all hyperlinks and store them in variable links
for(var i = 0; i < links.length; i++) { // loop through the hyperlinks in variable links

var url = links[i].href; // store array variable in url
var matchpos = url.search(/sfx.library.uu.nl/) // see if sfx.library.uu.nl occurs in the variable url
if (matchpos !=-1){ // if url contains sfx.library.uu.nl open url in new tab
GM_openInTab(url);

}
var matchpos1 = url.search(/pubmedcentral.nih.gov\/articlerender/); // see if pubmedcentral.nih.gov/articlerender occurs in the variable url
if (matchpos1 !=-1){ // if url contains pubmedcentral.nih.gov/articlerender open url in new tab
document.location = url;

}
var matchpos2 = url.search(/ncbi.nlm.nih.gov.proxy.library.uu.nl\/entrez\/utils\/fref.fcgi\?PrId/); // see if ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId occurs in the variable url
if (matchpos2 !=-1){ // if url contains ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId open url in new tab
GM_openInTab(url);

}

}
———————————————————————–

—– Resize window —————— —————————-

// ==UserScript==
// @name           Library
// @namespace      Sfx.library.uu.nl
// @include        http://sfx.library.uu.nl.proxy.library.uu.nl*
// ==/UserScript==

self.resizeTo(screen.availWidth,screen.availHeight);

———————————————————————–

———Automatically open PDF ——————————-

// ==UserScript==
// @name           Automatically open PDF
// @namespace      Pubmedcentral
// @include        http://www.pubmedcentral.nih.gov.proxy.library.uu.nl/articlerender.fcgi?tool=pubmed&pubmedid=*
// ==/UserScript==

// if a hyperlink on a http://www.pubmedcentral.nih.gov.proxy.library.uu.nl/articlerender.fcgi?tool=pubmed&pubmedid=* page contains blobtype=pdf then it refers to a pdf. So this scripts looks for such hyperlinks and opens them if it occurs.

var found = 0;
var links = document.getElementsByTagName(’a'); // get all hyperlinks and store them in variable links
for(var i = 0; i < links.length; i++) { // loop through the hyperlinks in variable links

var url = links[i].href;
var matchpos = url.search(/blobtype\=pdf/);  // see if blobtype=pdf occurs in the variable url

if (matchpos !=-1 && found==0){  // if url contains blobtype=pdf open url in new window
window.location = url;
//alert(url);
found = 1; // to prevent opening more than one window the variable found is set to 1

}

}

———————————————————————–

———Redirect Springerlink ————————————

// ==UserScript==
// @name           Redirect Springerlink
// @namespace      Pubmedcentral
// @include        http://www.springerlink.com/*
// ==/UserScript==

var str =  document.location.href;
var matchpos = str.search(/proxy.library.uu.nl/);
var rep =   “www.springerlink.com.proxy.library.uu.nl”;
if (matchpos ==-1){
str = str.replace(/www.springerlink.com/g, rep);
document.location.href= str;
}

———————————————————————–


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2 Reacties op “Greasemonkey scripts for pubmed”

  1. Dr Shock zegt:
     Add karma Subtract karma  +0

    Oeps, that looks complicated but will try it, thanks and kind regards Dr shock

    Zou u dit commentaar, indien u dit nog niet gedaan heeft, willen beoordelen?
  2. Jan Martens zegt:
     Add karma Subtract karma  +0

    I usually do not comment the scripts I make for myself. But I will comment them in a minute.
    If you need help or more explanation, let me know.

    Zou u dit commentaar, indien u dit nog niet gedaan heeft, willen beoordelen?

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